/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#ifndef BOLPSMNISTMCPREADER_H
#define BOLPSMNISTMCPREADER_H

#include "boost/regex.hpp"
#include "boost/lexical_cast.hpp"
#include <string>

#include "peptidespectrummatchreader.h"
#include "spectrumpeakintensityutilities.h"

namespace bol {

/**
read info coming from a nist export

	@author Alexandre Masselot,GeneBio,http://www.genebio.com, <alexandre.masselot@gmail.com>
*/
class PSMNistMSPReader : public PeptideSpectrumMatchReader
{
private:
  static boost::regex s_re_name;
  static boost::regex s_re_libid;
  static boost::regex s_re_precursor;
  static boost::regex s_re_status;
  static boost::regex s_re_fullname;
  static boost::regex s_re_comment;
  static boost::regex s_re_comment_sequence;
  static boost::regex s_re_comment_modif;
  static boost::regex s_re_comment_charge;
  static boost::regex s_re_parent;
  static boost::regex s_re_numpeaks;
  private:
public:
  PSMNistMSPReader();

  ~PSMNistMSPReader();

  PeptideSpectrumMatch* nextMatch();


};

}

#endif
